FastQCFastQC Report
Sun 1 Jul 2018
SRR5906250_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5906250_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117914895
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC100200.08.6747816
CCGATCT138250.06.695027
TATGCCG152900.06.40771548-49
CGTATGC177400.05.66857246-47
TTCCGAT178300.05.428495
TCGTATG204150.05.38570294
CGTCTGA1380250.05.30718594
ACGTCTG1488200.05.0927194
ATGCCGT220200.05.014817748-49
Produced by FastQC (version 0.11.5)