FastQCFastQC Report
Sun 1 Jul 2018
SRR5906250_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5906250_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117914895
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA136250.07.449606446-47
TCGCCGT171350.06.608875894
GCCGTAT171500.06.53492146-47
CCGTATC185550.06.077903748-49
CGTATCA190400.06.071160348-49
GTCGCCG196050.05.788562392-93
TGGTCGC255650.05.58756394
GGTCGCC244800.05.451318794
CGTGTAG1433050.05.22662894
GATCTCG543500.05.14413194
GTCGTGT1537750.05.063273494
Produced by FastQC (version 0.11.5)