• Negative Binomial Softmax Regression
• PhylEx
• Sequential graph matching with sequential Monte Carlo
  • SMC sampler for graph matching based on Plackett-Luce model combined with MC-EM for MAP estimation.
• Polya
  • Java code for Bayesian nonparametric inference based on probabilistic programming language Blang.
• Streaming sequential Monte Carlo.
  • Implementation of memory efficient sequential Monte Carlo method.
  • Useful for phylogenetics tree inference from DNA sequences, where the memory requirement can be prohibitive for even a small scale problem.
  • Experiments in Java.
  • Library.