Course Info

• Instructor: Seong-Hwan Jun.
• TAs: Hanwen Li and Abby Nguyen.
• Syllabus

Resources

• R4DS: R for Data Science (2e)
• ADVR: Advanced R
• MSMB: Modern Statistics for Modern Biology
• RPKG: R Packages (2e)
• HGWR: Happy Git with R
• OHGA: Orchestrating high-throughput genomic analysis with Bioconductor
• OSCA: Orchestrating Single Cell Analysis with Bioconductor
• G4S: Git for scientists
• TSG: Tidyverse style guide

Course Schedule

Sep 3

• Git merge conflict exercise
• Intro to Tidyverse.
  • Slides
• Data from files (R4DS Ch. 7)
  • Slides
  • Code and Data

Aug 29: R language fundamentals

• Names and values: ADVR Ch. 2
  • Slides
• Data types: ADVR Ch. 3
  • Slides
  • Code
  • Cat lovers data
• Indexing: ADVR Ch. 4
  • Slides
  • Code
• LB01

Aug 27: Meet the toolkit

• Intro slides
• Introduction to R and RStudio: R4DS Ch. 2, R4DS Ch. 6
  • Slides
• Reproducibility:
  • git (HGWR Ch. 4-14)
  • Quarto (R4DS Ch. 28)
• LB00