computing

• R package notes
• Compiling C++ code on Tetralith
• Useful commands

bioinformatics

• Notes on snakemake
• Processing Melanoma Data
• Ascat
• Configuring TitanCNA (manually)
• Variant calling
• Explore master file downloaded from European Nucleotide Archive
• How to download large number of single cell data
• Processing raw DNA-seq data

papers

• PhylEx: Clonal tree reconstruction via integration of bulk DNA-seq and scRNA-seq data
• Chemoresistance Evolution in TNBC Delineated by Single-Cell Sequencing

test

• test